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Yes, once you have chosen a reversible path for the calculation of
dS=dQ/T, you must correctly (and uniquely) specify dQ vs. dW (to
correctly evaluate dS this way). In such idealized quasi-static
processes, however, there is (I think) never much to quibble
about as to
what is dW and what is dQ.
But I really think that logically it goes the other way.
Once the final
state is determined (in part by applying the first law, with wide
discretion in dW vs dQ), then the change in entropy is determined and
known from its state function - this then determines dQ=TdS. In a
reversible process it is the entropy change which defines dQ.